Lsq_molecule [transformation_name] [mol]
Apply a transformation to a molecule or to part of a molecule. This option will change the coordinates of the atoms in the database. If you are frequently working with 2 or more molecules it might often be better to apply a transformation to the whole molecule, but remember to have a reverse transformation in the database to restore the coordinates to the correct place. Entering a [CR] at either prompt, terminates the option. If a transformation is defined, a vector .lsq_rt_[transformation_name] must exist in the database.